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Title: Genome sequence and analysis of the Japanese morning glory Ipomoea nil
Authors: Hoshino, Atsushi
Jayakumar, Vasanthan
Nitasaka, Eiji
Toyoda, Atsushi
Noguchi, Hideki
Itoh, Takehiko
Shin-I, Tadasu
Minakuchi, Yohei
Koda, Yuki
Nagano, Atsushi J.
Yasugi, Masaki
Honjo, Mie N.
Kudoh, Hiroshi  kyouindb  KAKEN_id
Seki, Motoaki
Kamiya, Asako
Shiraki, Toshiyuki
Carninci, Piero
Asamizu, Erika
Nishide, Hiroyo
Tanaka, Sachiko
Park, Kyeung-Il
Morita, Yasumasa
Yokoyama, Kohei
Uchiyama, Ikuo
Tanaka, Yoshikazu
Tabata, Satoshi
Shinozaki, Kazuo
Hayashizaki, Yoshihide
Kohara, Yuji
Suzuki, Yutaka
Sugano, Sumio
Fujiyama, Asao
Iida, Shigeru
Sakakibara, Yasubumi
Author's alias: 工藤, 洋
Issue Date: 8-Nov-2016
Publisher: Springer Nature
Journal title: Nature Communications
Volume: 7
Thesis number: 13295
Abstract: Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning glory) has been utilized as a model plant to study the genetic basis of floricultural traits, with over 1, 500 mutant lines. In the present study, we have utilized second- and third-generation-sequencing platforms, and have reported a draft genome of I. nil with a scaffold N50 of 2.88 Mb (contig N50 of 1.87 Mb), covering 98% of the 750 Mb genome. Scaffolds covering 91.42% of the assembly are anchored to 15 pseudo-chromosomes. The draft genome has enabled the identification and cataloguing of the Tpn1 family transposons, known as the major mutagen of I. nil, and analysing the dwarf gene, CONTRACTED, located on the genetic map published in 1956. Comparative genomics has suggested that a whole genome duplication in Convolvulaceae, distinct from the recent Solanaceae event, has occurred after the divergence of the two sister families.
Rights: © The Author(s) 2016. This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
URI: http://hdl.handle.net/2433/218946
DOI(Published Version): 10.1038/ncomms13295
PubMed ID: 27824041
Appears in Collections:Journal Articles

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