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タイトル: | Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition |
著者: | Alberti, Adriana Poulain, Julie Engelen, Stefan Labadie, Karine Romac, Sarah Ferrera, Isabel Albini, Guillaume Aury, Jean-Marc Belser, Caroline Bertrand, Alexis Cruaud, Corinne Da Silva, Corinne Dossat, Carole Gavory, Frédérick Gas, Shahinaz Guy, Julie Haquelle, Maud Jacoby, E'krame Jaillon, Olivier Lemainque, Arnaud Pelletier, Eric Samson, Gaëlle Wessner, Mark Acinas, Silvia G. Royo-Llonch, Marta Cornejo-Castillo, Francisco M. Logares, Ramiro Fernández-Gómez, Beatriz Bowler, Chris Cochrane, Guy Amid, Clara Hoopen, Petra Ten De Vargas, Colomban Grimsley, Nigel Desgranges, Elodie Kandels-Lewis, Stefanie Ogata, Hiroyuki https://orcid.org/0000-0001-6594-377X (unconfirmed) Poulton, Nicole Sieracki, Michael E. Stepanauskas, Ramunas Sullivan, Matthew B. Brum, Jennifer R. Duhaime, Melissa B. Poulos, Bonnie T. Hurwitz, Bonnie L. Pesant, Stéphane Karsenti, Eric Wincker, Patrick |
著者名の別形: | 緒方, 博之 |
発行日: | Dec-2017 |
出版者: | Springer Nature |
誌名: | Scientific Data |
巻: | 4 |
論文番号: | 170093 |
抄録: | A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009–2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world’s planktonic ecosystems. |
著作権等: | © The Author(s) 2017 This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
URI: | http://hdl.handle.net/2433/261880 |
DOI(出版社版): | 10.1038/sdata.2017.93 |
PubMed ID: | 28763055 |
出現コレクション: | 学術雑誌掲載論文等 |
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