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タイトル: | Phylogeographic history of Japanese macaques |
著者: | Ito, Tsuyoshi https://orcid.org/0000-0001-6193-2408 (unconfirmed) Hayakawa, Takashi Suzuki–Hashido, Nami Hamada, Yuzuru Kurihara, Yosuke Hanya, Goro https://orcid.org/0000-0002-8612-659X (unconfirmed) Kaneko, Akihisa Natsume, Takayoshi Aisu, Seitaro Honda, Takeaki Yachimori, Syuji Anezaki, Tomoko Omi, Toshinori Hayama, Shin‐ichi Tanaka, Mikiko Wakamori, Hikaru Imai, Hiroo Kawamoto, Yoshi |
著者名の別形: | 伊藤, 毅 濱田, 穣 栗原, 洋介 半谷, 吾郎 兼子, 明久 夏目, 尊好 愛洲, 星太郎 本田, 剛章 田中, 美希子 若森, 参 今井, 啓雄 川本, 芳 |
キーワード: | ecological niche modelling gene flow phylogeny population genomics primates refugia |
発行日: | Jun-2021 |
出版者: | Wiley |
誌名: | Journal of Biogeography |
巻: | 48 |
号: | 6 |
開始ページ: | 1420 |
終了ページ: | 1431 |
抄録: | [Aim] Understanding patterns and processes of geographic genetic variation within and among closely related species is the essence of phylogeography. Japanese macaques, also called snow monkeys, have been extensively studied, particularly in the fields of sociobiology, ecology and experimental biology; however, our knowledge of their evolutionary history is relatively limited. In this study we aimed to elucidate the geographic patterns of genetic variation in Japanese macaques and the processes that underlie them. [Location] Japan. [Taxa] Japanese macaque, Macaca fuscata; rhesus macaque, M. mulatta; Taiwanese macaque, M. cyclopis. [Methods] Double-digest restriction site-associated DNA (RAD) sequencing was used to identify genome-wide single nucleotide variants. We used fineRADstructure, ADMIXTURE and principal component analyses to estimate the genetic population structure. Phylogenetic relationships were then inferred based on neighbour-net, neighbour-joining, maximum likelihood and SVDquartets algorithms. We assessed gene flow using demographic inference and ABBA-BABA tests, and estimated past distributions during the Last Glacial Maximum (LGM) using ecological niche modelling. [Results] Japanese macaques show a sister group relationship with a clade comprising Chinese rhesus, Indian rhesus and Taiwanese macaques. Japanese macaques comprise major north-eastern and south-western clades, with a boundary located near central Japan, and gene flow between the north-eastern and south-western lineages was detected. Refugia during the LGM were estimated to be distributed in limited areas along the south coasts of the Japanese archipelago. [Main conclusions] Phylogeographic variation of Japanese macaques is likely due mainly to northeast–southwest divergence, which resulted from withdrawal into refugia during the glacial period, and subsequent gene flow. |
著作権等: | This is the peer reviewed version of the following article: [Ito, T., Hayakawa, T., Suzuki–Hashido, N., Hamada, Y., Kurihara, Y., Hanya, G., Kaneko, A., Natsume, T., Aisu, S., Honda, T., Yachimori, S., Anezaki, T., Omi, T., Hayama, S.-i., Tanaka, M., Wakamori, H., Imai, H. and Kawamoto, Y. (2021), Phylogeographic history of Japanese macaques. J Biogeogr, 48: 1420-1431.], which has been published in final form at https://doi.org/10.1111/jbi.14087. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. This article may not be enhanced, enriched or otherwise transformed into a derivative work, without express permission from Wiley or by statutory rights under applicable legislation. Copyright notices must not be removed, obscured or modified. The article must be linked to Wiley’s version of record on Wiley Online Library and any embedding, framing or otherwise making available the article or pages thereof by third parties from platforms, services and websites other than Wiley Online Library must be prohibited. The full-text file will be made open to the public on 15 April 2022 in accordance with publisher's 'Terms and Conditions for Self-Archiving'. This is not the published version. Please cite only the published version. この論文は出版社版でありません。引用の際には出版社版をご確認ご利用ください。 |
URI: | http://hdl.handle.net/2433/267722 |
DOI(出版社版): | 10.1111/jbi.14087 |
出現コレクション: | 学術雑誌掲載論文等 |
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