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Free-energy function for discriminating the native fold of a protein from misfolded decoys. Yasuda, Satoshi; Yoshidome, Takashi; Harano, Yuichi; Roth, Roland; Oshima, Hiraku; Oda, Koji; Sugita, Yuji; Ikeguchi, Mitsunori; Kinoshita, Masahiro (2011-05-09) Proteins : structure, function, and genetics, 79(7): 2161-2171
Physical origins of the high structural stability of CLN025 with only ten residues. Yasuda, Satoshi; Hayashi, Tomohiko; Kinoshita, Masahiro (2014-09-10) The Journal of chemical physics, 141(10)
Crucial importance of the water-entropy effect in predicting hot spots in protein-protein complexes. Oshima, Hiraku; Yasuda, Satoshi; Yoshidome, Takashi; Ikeguchi, Mitsunori; Kinoshita, Masahiro (2011-08-15) Physical chemistry chemical physics : PCCP, 13(36): 16236-16246
On the physics of multidrug efflux through a biomolecular complex. Mishima, Hirokazu; Oshima, Hiraku; Yasuda, Satoshi; Amano, Ken-Ichi; Kinoshita, Masahiro (2013-11-27) The Journal of chemical physics, 139(20)
Entropic release of a big sphere from a cylindrical vessel Mishima, Hirokazu; Oshima, Hiraku; Yasuda, Satoshi; Amano, Ken-ichi; Kinoshita, Masahiro (2013-03) Chemical Physics Letters, 561-562: 159-165
Structural stability of proteins in aqueous and nonpolar environments. Yasuda, Satoshi; Oshima, Hiraku; Kinoshita, Masahiro (2012-10-07) The Journal of chemical physics, 137(13)
Effects of side-chain packing on the formation of secondary structures in protein folding. Yasuda, Satoshi; Yoshidome, Takashi; Oshima, Hiraku; Kodama, Ryota; Harano, Yuichi; Kinoshita, Masahiro (2010-02-14) The Journal of chemical physics, 132(6)