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Exact algorithms for computing the tree edit distance between unordered trees
  Akutsu, Tatsuya, Fukagawa, Daiji, Takasu, Atsuhiro, Tamura, Takeyuki (2011-02-04)
  Theoretical Computer Science, 412(4-5): 352-364
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Analysis of the impact degree distribution in metabolic networks using branching process approximation
  Takemoto, Kazuhiro, Tamura, Takeyuki, Cong, Yang, Ching, Wai-Ki, Vert, Jean-Philippe, Akutsu, Tatsuya (2012-01)
  Physica A: Statistical Mechanics and its Applications, 391(1-2): 379-387
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Inferring a graph from path frequency
  Akutsu, Tatsuya, Fukagawa, Daiji, Jansson, Jesper, Sadakane, Kunihiko (2012-07)
  Discrete Applied Mathematics, 160(10-11): 1416-1428
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Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures
  Zhao, Yang, Hayashida, Morihiro, Akutsu, Tatsuya (2010-12-14)
  BMC bioinformatics, 11 (Suppl 11)
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Determining a singleton attractor of a boolean network with nested canalyzing functions
  Akutsu, Tatsuya, Melkman, Avraham A, Tamura, Takeyuki, Yamamoto, Masaki (2011-09)
  Journal of computational biology : a journal of computational molecular cell biology, 18(10): 1275-1290
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Network completion for static gene expression data
  Nakajima, Natsu, Akutsu, Tatsuya (2014-03-26)
  Advances in bioinformatics, 2014
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Approximating Tree Edit Distance through String Edit Distance
  Akutsu, Tatsuya, Fukagawa, Daiji, Takasu, Atsuhiro (2010-06)
  Algorithmica, 57(2): 325-348
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Proteome compression via protein domain compositions
  Hayashida, Morihiro, Ruan, Peiying, Akutsu, Tatsuya (2014-06-01)
  Methods, 67(3): 380-385
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Archaeal β diversity patterns under the seafloor along geochemical gradients
  Koyano, Hitoshi, Tsubouchi, Taishi, Kishino, Hirohisa, Akutsu, Tatsuya (2014-09-02)
  Journal of Geophysical Research: Biogeosciences, 119(9): 1770-1788
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Prediction of Protein-Protein Interaction Strength Using Domain Features with Supervised Regression
  Kamada, Mayumi, Sakuma, Yusuke, Hayashida, Morihiro, Akutsu, Tatsuya (2014-06-24)
  The Scientific World Journal, 2014
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