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Effects of heme on the thermal stability of mesophilic and thermophilic cytochromes c: Comparison between experimental and theoretical results
  Oda, Koji, Kodama, Ryota, Yoshidome, Takashi, Yamanaka, Masaru, Sambongi, Yoshihiro, Kinoshita, Masahiro (2011-01-14)
  The Journal of chemical physics, 134(2)
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Entropic potential field formed for a linear-motor protein near a filament: Statistical-mechanical analyses using simple models
  Amano, Ken-Ichi, Yoshidome, Takashi, Iwaki, Mitsuhiro, Suzuki, Makoto, Kinoshita, Masahiro (2010-07-28)
  The Journal of chemical physics, 133(4)
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Free-energy function for discriminating the native fold of a protein from misfolded decoys
  Yasuda, Satoshi, Yoshidome, Takashi, Harano, Yuichi, Roth, Roland, Oshima, Hiraku, Oda, Koji, Sugita, Yuji, Ikeguchi, Mitsunori, Kinoshita, Masahiro (2011-05-09)
  Proteins : structure, function, and genetics, 79(7): 2161-2171
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Importance of water entropy in rotation mechanism of F1-ATPase
  Yoshidome, Takashi (2011)
  BIOPHYSICS, 7: 113-122
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Crucial importance of the water-entropy effect in predicting hot spots in protein-protein complexes
  Oshima, Hiraku, Yasuda, Satoshi, Yoshidome, Takashi, Ikeguchi, Mitsunori, Kinoshita, Masahiro (2011-08-15)
  Physical chemistry chemical physics : PCCP, 13(36): 16236-16246
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Effects of side-chain packing on the formation of secondary structures in protein folding
  Yasuda, Satoshi, Yoshidome, Takashi, Oshima, Hiraku, Kodama, Ryota, Harano, Yuichi, Kinoshita, Masahiro (2010-02-14)
  The Journal of chemical physics, 132(6)
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Physical origin of hydrophobicity studied in terms of cold denaturation of proteins: comparison between water and simple fluids
  Yoshidome, Takashi, Kinoshita, Masahiro (2012-08-31)
  Physical chemistry chemical physics : PCCP, 14(42): 14554-14566
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