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High contribution of Synechococcus to phytoplankton biomass in the aphotic hypolimnion in a deep freshwater lake (Lake Biwa, Japan)
  Takasu, Hiroyuki, Ushio, Masayuki, LeClair, E. LeClair, Nakano, Shin-ichi (2015-05-06)
  Aquatic Microbial Ecology, 75(1): 69-79
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High-throughput sequencing shows inconsistent results with a microscope-based analysis of the soil prokaryotic community
  Ushio, Masayuki, Makoto, Kobayashi, Klaminder, Jonatan, Takasu, Hiroyuki, Nakano, Shin-ichi (2014-09)
  Soil Biology and Biochemistry, 76: 53-56
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Effects of condensed tannins in conifer leaves on the composition and activity of the soil microbial community in a tropical montane forest
  Ushio, Masayuki, Balser, Teri C., Kitayama, Kanehiro (2013-04)
  Plant and Soil, 365(1-2): 157-170
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A coexisting fungal-bacterial community stabilizes soil decomposition activity in a microcosm experiment
  Ushio, Masayuki, Miki, Takeshi, Balser, Teri C (2013-11-18)
  PloS one, 8(11)
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CARD-FISH analysis of prokaryotic community composition and abundance along small-scale vegetation gradients in a dry arctic tundra ecosystem
  Ushio, Masayuki, Makoto, Kobayashi, Klaminder, Jonatan, Nakano, Shin-ichi (2013-09)
  Soil Biology and Biochemistry, 64: 147-154
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Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance
  Tsuji, Satsuki, Ushio, Masayuki, Sakurai, Sho, Minamoto, Toshifumi, Yamanaka, Hiroki (2017-4-27)
  PLOS ONE, 12(4)
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Empirical dynamic modeling for beginners
  Chang, Chun-Wei, Ushio, Masayuki, Hsieh, Chih-hao (2017-11)
  Ecological Research, 32(6): 785-796
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Demonstration of the potential of environmental DNA as a tool for the detection of avian species
  Ushio, Masayuki, Murata, Koichi, Sado, Tetsuya, Nishiumi, Isao, Takeshita, Masamichi, Iwasaki, Wataru, Miya, Masaki (2018-03-14)
  Scientific Reports, 8
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