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Title: ViPTree: the viral proteomic tree server
Authors: Nishimura, Yosuke
Yoshida, Takashi  kyouindb  KAKEN_id
Kuronishi, Megumi
Uehara, Hideya
Ogata, Hiroyuki  kyouindb  KAKEN_id
Goto, Susumu
Author's alias: 西村, 陽介
黒西, 愛
上原, 英也
緒方, 博之
五斗, 進
Keywords: Statistics and Probability
Computational Theory and Mathematics
Biochemistry
Molecular Biology
Computational Mathematics
Computer Science Applications
Issue Date: 30-Mar-2017
Publisher: Oxford University Press (OUP)
Journal title: Bioinformatics
Volume: 33
Issue: 15
Start page: 2379
End page: 2380
Abstract: ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for classification of viruses based on genome-wide similarities. Users can upload viral genomes sequenced either by genomics or metagenomics. ViPTree generates proteomic trees for the uploaded genomes together with flexibly selected reference viral genomes. ViPTree also serves as a platform to visually investigate genomic alignments and automatically annotated gene functions for the uploaded viral genomes, thus providing virus researchers the first choice for classifying and understanding newly sequenced viral genomes.
Rights: This is a pre-copyedited, author-produced PDF of an article accepted for publication in 'Bioinformatics' following peer review. The version of record [Yosuke Nishimura, Takashi Yoshida, Megumi Kuronishi , Hideya Uehara, Hiroyuki Ogata, Susumu Goto. ViPTree: the viral proteomic tree server. Bioinformatics btx157.] is available online at: https://doi.org/10.1093/bioinformatics/btx157
The full-text file will be made open to the public on 30 March 2018 in accordance with publisher's 'Terms and Conditions for Self-Archiving'
This is not the published version. Please cite only the published version. この論文は出版社版でありません。引用の際には出版社版をご確認ご利用ください。
URI: http://hdl.handle.net/2433/226604
DOI(Published Version): 10.1093/bioinformatics/btx157
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