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Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation. Lin, Miao-Hsia; Sugiyama, Naoyuki; Ishihama, Yasushi (2015-09-15) Science signaling, 8(394) | |
Exploring the landscape of ectodomain shedding by quantitative protein terminomics Tsumagari, Kazuya; Chang, Chih-Hsiang; Ishihama, Yasushi (2021-04-23) iScience, 24(4) | |
Flagellin FliC Phosphorylation Affects Type 2 Protease Secretion and Biofilm Dispersal in Pseudomonas aeruginosa PAO1 Suriyanarayanan, Tanujaa; Periasamy, Saravanan; Lin, Miao-Hsia; Ishihama, Yasushi; Swarup, Sanjay (2016-10-04) PLOS ONE, 11(10) | |
Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics. Tsai, Chia-Feng; Wang, Yi-Ting; Yen, Hsin-Yung; Tsou, Chih-Chiang; Ku, Wei-Chi; Lin, Pei-Yi; Chen, Hsuan-Yu; Nesvizhskii, Alexey I; Ishihama, Yasushi; Chen, Yu-Ju (2015-03-27) Nature communications, 6 | |
Effect of Phosphorylation on the Collision Cross Sections of Peptide Ions in Ion Mobility Spectrometry Ogata, Kosuke; Chang, Chih-Hsiang; Ishihama, Yasushi (2021-01-30) Mass Spectrometry, 10(1) | |
Blood concentrations of small extracellular vesicles are determined by a balance between abundant secretion and rapid clearance Matsumoto, Akihiro; Takahashi, Yuki; Chang, Hsin‐Yi; Wu, Yi‐Wen; Yamamoto, Aki; Ishihama, Yasushi; Takakura, Yoshinobu (2020-09) Journal of Extracellular Vesicles, 9(1) | |
Two Ck1δ transcripts regulated by m6A methylation code for two antagonistic kinases in the control of the circadian clock Fustin, Jean-Michel; Kojima, Rika; Itoh, Kakeru; Chang, Hsin-Yi; Shiqi, Ye; Zhuang, Bowen; Oji, Asami; Gibo, Shingo; Narasimamurthy, Rajesh; Virshup, David; Kurosawa, Gen; Doi, Masao; Manabe, Ichiro; Ishihama, Yasushi; Ikawa, Masahito; Okamura, Hitoshi (2018-06-05) Proceedings of the National Academy of Sciences, 115(23): 5980-5985 | |
Actin-binding protein coronin 1A controls osteoclastic bone resorption by regulating lysosomal secretion of cathepsin K Ohmae, Saori; Noma, Naruto; Toyomoto, Masayasu; Shinohara, Masahiro; Takeiri, Masatoshi; Fuji, Hiroaki; Takemoto, Kenji; Iwaisako, Keiko; Fujita, Tomoko; Takeda, Norihiko; Kawatani, Makoto; Aoyama, Mineyoshi; Hagiwara, Masatoshi; Ishihama, Yasushi; Asagiri, Masataka (2017-03-16) Scientific reports, 7 | |
Motif-centric phosphoproteomics to target kinase-mediated signaling pathways Tsai, Chia-Feng; Ogata, Kosuke; Sugiyama, Naoyuki; Ishihama, Yasushi (2022-01) Cell Reports Methods, 2(1) | |
A multi-omic analysis of human naïve CD4+ T cells Mitchell, Christopher J.; Getnet, Derese; Kim, Min Sik; Manda, Srikanth S.; Kumar, Praveen; Huang, Tai Chung; Pinto, Sneha M.; Nirujogi, Raja Sekhar; Iwasaki, Mio; Shaw, Patrick G.; Wu, Xinyan; Zhong, Jun; Chaerkady, Raghothama; Marimuthu, Arivusudar; Muthusamy, Babylakshmi; Sahasrabuddhe, Nandini A.; Raju, Rajesh; Bowman, Caitlyn; Danilova, Ludmila; Cutler, Jevon; Kelkar, Dhanashree S.; Drake, Charles G.; Prasad, T. S Keshava; Marchionni, Luigi; Murakami, Peter N.; Scott, Alan F.; Shi, Leming; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Irizarry, Rafael; Cope, Leslie; Ishihama, Yasushi; Wang, Charles; Gowda, Harsha; Pandey, Akhilesh (2015-11-06) BMC Systems Biology, 9 |
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